Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891973.1_cds_XP_016446875.1_41689
CDS Infomation

[gene=LOC107771927] [db_xref=GeneID:107771927] [protein=CDK5RAP1-like protein] [protein_id=XP_016446875.1] [location=join(39127..39443,41965..43022,43484..43992)] [gbkey=CDS]
Sequence

ATGGCGTCTTCTCTATCTTCTCTATCGACCATATTGAGCCAGCCTCACTGTGCCGTACGC
ATCAAATTCCCTAAACATTACTCTTCCTTCCACGTCAGATTCCTCTCGTCGAAGCTTCTC
CAACTTCAATCCTCCTCCTGCCGCCGCACGTCAGCCGCTCTTAGAAGGAGCTCTACATTC
TCTCTCAAGATTTCCAGAAACTTCTCCAACTGTCAATCTCGCACTTCTTTACCCAGCAAG
GACCAAATTCCAAGCCTTCACCAATTCATCCCCAAAGCTACTGCTCCCACTGTTTCTGCT
TCCGATGTTCAGTCCGAGCCTGTGATGATATCTGGTGTTATGCCAAGAGGTCGCATCTAT
CATGAAACTTATGGATGCCAAATGAATGTCAATGATATGGAGATTGTTTTATCTATCATG
AAAAATGCTGGATACACTGAAAGCGTGGAAGTCCCAGAGAATGCTGAGATAATATTTATA
AATACTTGTGCTATAAGGGACAATGCAGAACATAAGGTCTGGCAGAGGCTCAATTATTTT
TGGTTTCTTAAGAGACAATGGAAGAGCAATGTTGCGATTGGAAGGTCACAGTCCACACAT
CCTCCCAAAGTAGTTGTGCTGGGATGTATGGCGGAGAGGTTGAAGGACAAAATATTGGAT
TCAGATAAGATGGTTGACGTGGTTTGTGGACCTGATGCTTATCGAGACTTGCCACGCCTG
TTGGAAGAGGTGGACTATGGTCAAAAAGGTATCAATACTCTACTTTCACTTGAAGAAACT
TATGCGGATATTAATCCAGTTCGCATCTCCAAAAATTCTATATCTGCATTTGTATCTGTG
ATGAGGGGTTGCAATAATATGTGCTCATTCTGCATTGTTCCCTTCACTAGAGGGAGAGAA
CGGTCTCGCCCAGTGGAATCAATTGTGAAAGAGGTCGCTGAACTTTGGAAAGAGGGAGTC
AAAGAGGTTACGCTTCTTGGCCAAAATGTAAATAGCTATAATGATACATCTGGAGTTGAA
AATCCGGCTGAACCAGCAGTCAGTTGGGAACTTAGTGATGGATTCTCCAGCATATGCAAA
GTAAAACATGTGGGTCTACGGTTTGCTGATCTCCTAGATAGACTTGCGACAGAATTTCCT
GAAATGCGATTCAGATACACTTCCCCACATCCTAAAGATTTTCCAGATGATTTGCTGTAC
GTAATGCGGGATAGGTACAATATCTGCAAAAGCATTCATCTGCCAGCACAGTCAGGCAGC
AGTGCAGTGCTTGAAAGAATGCGTCGTGGATATACTCGAGAAGCATACTTAGATCTTGTG
AAGAAGATAAGGGATATAATACCTGACATGGGCATAAGCAGTCACTTCATATGTGGTTTC
TGTGGAGAAACGGAAGAGGATCACAAAGACACACTAAGCCTCGTAAAGGCTGTTTGTTAT
GATATGGCATACATGTTTGCTTACAGCATGAGAGAGAAAACACATGCCCACAGAAAATAT
GTTGATGATGTTCCTGATGATGTTAAGCAAAGGAGGCTCACAGAACTAATTGAGGCTTTT
CGTGGGAGTACAGGTCAGAACTATGACTCTAAAATTGGTACTCTCCAACTTGTGCTAGTT
GAAGGACCCAATAAGAGAGCCCCAGACACAGAGTTAATTGGCAAGAGCGACAGAGGCCAT
AGGGTATCATTTACTAACCTGCCTATCCCAGATAAGGTTGATAATAATGGGAAGCGAAAC
CCAAAGATTGGTGATTATGTTGAAGTGCACATAATAAAATCTACAAGGGCATCACTGTTT
GGAGAAGCACTTGCTATAACTAAATTGAGCTCATTTTACAGCTCTTCACATGAAGAAGCT
GTTACCTTTGCCAGCAGAACATAA

Peptide Sequence

PEP ID

XP_016446875.1
PEP Infomation

PREDICTED: CDK5RAP1-like protein [Nicotiana tabacum]
Sequence

MASSLSSLSTILSQPHCAVRIKFPKHYSSFHVRFLSSKLLQLQSSSCRRTSAALRRSSTF
SLKISRNFSNCQSRTSLPSKDQIPSLHQFIPKATAPTVSASDVQSEPVMISGVMPRGRIY
HETYGCQMNVNDMEIVLSIMKNAGYTESVEVPENAEIIFINTCAIRDNAEHKVWQRLNYF
WFLKRQWKSNVAIGRSQSTHPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDLPRL
LEEVDYGQKGINTLLSLEETYADINPVRISKNSISAFVSVMRGCNNMCSFCIVPFTRGRE
RSRPVESIVKEVAELWKEGVKEVTLLGQNVNSYNDTSGVENPAEPAVSWELSDGFSSICK
VKHVGLRFADLLDRLATEFPEMRFRYTSPHPKDFPDDLLYVMRDRYNICKSIHLPAQSGS
SAVLERMRRGYTREAYLDLVKKIRDIIPDMGISSHFICGFCGETEEDHKDTLSLVKAVCY
DMAYMFAYSMREKTHAHRKYVDDVPDDVKQRRLTELIEAFRGSTGQNYDSKIGTLQLVLV
EGPNKRAPDTELIGKSDRGHRVSFTNLPIPDKVDNNGKRNPKIGDYVEVHIIKSTRASLF
GEALAITKLSSFYSSSHEEAVTFASRT

Transcript Sequence

Gene sequence data has not been registered.